RetrogeneDB ID:

retro_nleu_3128

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL405113.1:3431..3696(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RARRES2
Ensembl ID:ENSNLEG00000001362
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_3128
AGACAGAGAAGCGGCCGGAGGAAGGACTGGAAGAAACCCAAGTGCAAAGTCCAGCCCGAGGGGAGGAAGCAGACATGGCT
GACCTGCGTCAAAATGGGCTGTGAGGATAAGGTTCTGGGCAGGATGGTTCGCTGCCCTCCAGAGACGCAGACTCGGCGGG
AGCCTGAGGAGCACCAGGAGACCCGGTGCAGCTGGGCAGAGCGGGCAGTGAGGACCCCACAGCTGCTGCTTCCCTGCACA
GTTCGCCTTCTCCAAGGCCTGGCCC

ORF - retro_nleu_3128 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.54 %
Parental protein coverage: 54.6 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQQTSCRKSDWKKPGCKVRPNGRKRKCLACIKLGSEDKVLGRMVHCPIETQVLWQEPEHQETQCIRVQRA-
.Q.S.R..DWKKP.CKV.P.GRK...L.C.K.G.EDKVLGRMV.CP.ETQ......EHQET.C....RA.
RetrocopyRQRSGRRKDWKKPKCKVQPEGRKQTWLTCVKMGCEDKVLGRMVRCPPETQTRREPEEHQETRCSWAERA<
ParentalGED-PHSFYFPGQFAFSKALP
.ED.PHS..FP.QFAFSKA.P
RetrocopySED<PHSCCFPAQFAFSKAWP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_3128 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 79 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000103225 retrocopies
Homo sapiens ENSG0000010653813 retrocopies
Gorilla gorilla ENSGGOG000000111581 retrocopy
Macaca mulatta ENSMMUG000000052324 retrocopies
Nomascus leucogenys ENSNLEG00000001362 18 retrocopies
Pongo abelii ENSPPYG0000001816628 retrocopies
Pan troglodytes ENSPTRG0000001985410 retrocopies



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