RetrogeneDB ID: | retro_pabe_638 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:133345247..133345576(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPPYG00000018166 | ||
Aliases: | None | ||
Description: | Retinoic acid receptor responder protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R551] |
Percent Identity: | 53.85 % |
Parental protein coverage: | 68.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | SVESAV-DTPF-PAGIF-VRLEFKLQQTSCR-KRDWKKPECKVRPNGRKRKCLACIKLGSEDKVLGRLVH |
.V.SA..DTP..PAG...VR.EF.......R...DWKKP.CK..P..RK.KC..C..L..EDKVLG..V. | |
Retrocopy | TVDSAL<DTPY<PAGTW<VRMEFSSADREAR>RKDWKKPKCKDVPERRKQKCVTCVNLDCEDKVLGTIVR |
Parental | CPIETQVLREPEEHQETQCIRVQRA-GEDP-HSFYFPGQFAFSKALP |
CP.E.Q..RE.EE.QE..C.R..RA..EDP.HS..FP.Q.AFSKA.P | |
Retrocopy | CPPEMQTWREREELQEARCSRAERA<VEDP<HSCWFPAQLAFSKARP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .03 RPM |
SRP007412_heart | 0 .00 RPM | 7 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 181 .38 RPM |
SRP007412_liver | 0 .00 RPM | 384 .91 RPM |