RetrogeneDB ID: | retro_pabe_3540 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | Un:10992835..10993094(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPPYG00000018166 | ||
Aliases: | None | ||
Description: | Retinoic acid receptor responder protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R551] |
Percent Identity: | 68.54 % |
Parental protein coverage: | 53.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QQTSCRKRDWKKPECKVRPNGRKRKCLACIKLGSEDKVLGRLVHCPIETQVLREPEEHQETQCIRVQRA- |
.QTS.R..DWKKP.CKV...GRK.KCL.C.KLG.EDKVLGR.VHCP.E.Q..REP.EHQE..C.R..RA. | |
Retrocopy | RQTSGRRKDWKKPKCKVQSKGRKQKCLTCVKLGCEDKVLGRIVHCPTESQTRREPGEHQEARCSRAERA< |
Parental | GED-PHSFYFPGQFAFSKA |
GED.PHS..FP.QFAFSKA | |
Retrocopy | GED<PHSYCFPAQFAFSKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .03 RPM |
SRP007412_heart | 0 .00 RPM | 7 .53 RPM |
SRP007412_kidney | 0 .03 RPM | 181 .38 RPM |
SRP007412_liver | 0 .03 RPM | 384 .91 RPM |