RetrogeneDB ID: | retro_hsap_2622 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:27527740..27528108(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000230807 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSG00000221983 | ||
Aliases: | UBA52, CEP52, HUBCEP52, L40, RPL40 | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458] |
Percent Identity: | 87.2 % |
Parental protein coverage: | 96.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
QIFVKTLTGKTITL.V.PSDTIENVKAKIQDKE.GIPPDQQ.LI.AGKQLEDGRTLSD.NI.KESTLHLV | |
Retrocopy | QIFVKTLTGKTITLDVKPSDTIENVKAKIQDKE<GIPPDQQHLILAGKQLEDGRTLSDCNIWKESTLHLV |
Parental | LRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKK |
LRL.GGIIEPSL.QL.QKYNCDKMICRKCYA.LHPRAVNC..K.C.HTNNL.PKK | |
Retrocopy | LRL*GGIIEPSLCQLSQKYNCDKMICRKCYACLHPRAVNC-CKRCDHTNNL*PKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 369 .31 RPM |
bodymap2_adrenal | 0 .00 RPM | 423 .72 RPM |
bodymap2_brain | 0 .00 RPM | 115 .04 RPM |
bodymap2_breast | 0 .00 RPM | 263 .43 RPM |
bodymap2_colon | 0 .00 RPM | 334 .66 RPM |
bodymap2_heart | 0 .17 RPM | 146 .65 RPM |
bodymap2_kidney | 0 .00 RPM | 148 .67 RPM |
bodymap2_liver | 0 .00 RPM | 186 .94 RPM |
bodymap2_lung | 0 .00 RPM | 437 .73 RPM |
bodymap2_lymph_node | 0 .00 RPM | 472 .85 RPM |
bodymap2_ovary | 0 .00 RPM | 369 .09 RPM |
bodymap2_prostate | 0 .00 RPM | 434 .87 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 508 .06 RPM |
bodymap2_testis | 0 .00 RPM | 299 .65 RPM |
bodymap2_thyroid | 0 .08 RPM | 214 .47 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 675 .23 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1767 |
Gorilla gorilla | retro_ggor_1835 |
Callithrix jacchus | retro_cjac_1561 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .09 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .07 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .02 RPM |