RetrogeneDB ID: | retro_rnor_1458 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 19:41725045..41725362(-) | ||
Located in intron of: | ENSRNOG00000017879 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000049551 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Uba52 | ||
Ensembl ID: | ENSRNOG00000019974 | ||
Aliases: | Uba52, Rps27a, Ubb | ||
Description: | Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P62986] |
Percent Identity: | 84.55 % |
Parental protein coverage: | 83.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | TIENVKAKIQDKEGI-PPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLRLRGGIIEPSLRQLAQKY |
TIENVKAKIQD.E...PPDQQRLIFAGKQLEDGRTLSDYN.Q.EST.LHLVLRL.G.IIEPSLRQLAQKY | |
Retrocopy | TIENVKAKIQDMEVV<PPDQQRLIFAGKQLEDGRTLSDYNTQREST>LHLVLRLCGDIIEPSLRQLAQKY |
Parental | NCDKMICRKCYARLH-PRAVNCRKKKCGHTNNLRPKKKVK |
NCDKMICR.CYA.LH.PRAV.CRKK..GHTNNLR..KKVK | |
Retrocopy | NCDKMICRTCYAHLH<PRAVSCRKKG-GHTNNLRLLKKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 110 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 143 .75 RPM |
SRP017611_liver | 0 .00 RPM | 104 .08 RPM |