RetrogeneDB ID: | retro_btau_832 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:96820893..96821268(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSBTAG00000007737 | ||
Aliases: | UBA52, RPS27A, UBB, UBC | ||
Description: | Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P63048] |
Percent Identity: | 79.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIF.KTL.GKTITLE..PSDT.ENVKA.IQDKEGIPPDQQ.LIF.G.QLE.G.TLS.YNIQKESTLH.V | |
Retrocopy | MQIFMKTLVGKTITLE--PSDTTENVKAIIQDKEGIPPDQQHLIFVGTQLENGCTLSEYNIQKESTLHMV |
Parental | LRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK |
L.LRG.I.EPSL.QLAQK.NC.KMIC.KCY..LHPRAVNC..KK.G.TNNLRPKKKVK | |
Retrocopy | LSLRGSITEPSLCQLAQKHNCNKMICCKCYTYLHPRAVNC-CKK*GQTNNLRPKKKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 161 .42 RPM |
ERP005899_muscle | 0 .00 RPM | 900 .42 RPM |
SRP017611_brain | 0 .00 RPM | 104 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 167 .15 RPM |
SRP017611_liver | 0 .00 RPM | 152 .07 RPM |
SRP030211_testis | 0 .00 RPM | 228 .14 RPM |