RetrogeneDB ID: | retro_ecab_1014 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:63528141..63528526(+) | ||
Located in intron of: | ENSECAG00000017294 | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000018595 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSECAG00000020660 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382] |
Percent Identity: | 86.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTLTGKTITLEVE.SDTIENVKAKIQDKEGIPPDQQ.LIFAGKQLEDGRTLSDYNIQ..STLHLV | |
Retrocopy | MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQCLIFAGKQLEDGRTLSDYNIQRDSTLHLV |
Parental | LR-LRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK |
LR.L.G.I.EPSL.QLAQKYNCD.MIC.KCYAR.HPRAVNC.KK.CGH.NN..PK.KVK | |
Retrocopy | LR>LQGSILEPSLCQLAQKYNCDEMICCKCYARPHPRAVNCPKKQCGHANNTCPKRKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .35 RPM | 321 .89 RPM |
SRP021940_cerebellum | 0 .16 RPM | 180 .83 RPM |
SRP021940_embryo | 0 .69 RPM | 494 .40 RPM |
SRP021940_placental_villous | 0 .24 RPM | 237 .96 RPM |
SRP021940_synovial_membrane | 0 .88 RPM | 384 .58 RPM |
SRP021940_testis | 0 .83 RPM | 642 .44 RPM |