RetrogeneDB ID: | retro_rnor_944 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:106285493..106285867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Uba52 | ||
Ensembl ID: | ENSRNOG00000019974 | ||
Aliases: | Uba52, Rps27a, Ubb | ||
Description: | Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P62986] |
Percent Identity: | 72.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHL |
MQIF.KTL.GKTITLEVEPSDT.ENVKAK..DKEG..P......F.GKQLEDG.R.LSDYN.QKESTLH. | |
Retrocopy | MQIFMKTLKGKTITLEVEPSDTMENVKAKNEDKEGTHPS*PSEAFVGKQLEDG<RILSDYNTQKESTLHP |
Parental | VLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK |
VLRLR.GI...SLRQ.AQKYNCDKMIC..C.AR..P.AVN...KK..HT.NLRPKKK.K | |
Retrocopy | VLRLRSGITAQSLRQFAQKYNCDKMICGQCHAR--PHAVN-GCKKGSHTDNLRPKKKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 110 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 143 .75 RPM |
SRP017611_liver | 0 .00 RPM | 104 .08 RPM |