RetrogeneDB ID: | retro_ecab_772 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:2126494..2126877(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000007204 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSECAG00000020660 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382] |
Percent Identity: | 71.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFV.TL.GKTITLEV.PSDT.ENVKAK.QDKEGI.PDQQ.L.F.GKQLEDG.TL..YNIQKE..L.L. | |
Retrocopy | MQIFVETLMGKTITLEVQPSDTTENVKAKTQDKEGILPDQQCLVFVGKQLEDGLTLTEYNIQKECALNLL |
Parental | LRLRGGIIEPSLRQLAQKYNCDKMICRKCY-ARLHPRAVNCRKKKCGHTNNLRPKKKVK |
L.L.G.IIEPSL.QLAQKYN...M.C.KC....LHP..VNC.KKKCGH.NNL..KK..K | |
Retrocopy | LHLQGNIIEPSLHQLAQKYNSNEMTCPKCH<PHLHPCTVNCHKKKCGHINNLYLKKNIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 321 .89 RPM |
SRP021940_cerebellum | 0 .00 RPM | 180 .83 RPM |
SRP021940_embryo | 0 .10 RPM | 494 .40 RPM |
SRP021940_placental_villous | 0 .00 RPM | 237 .96 RPM |
SRP021940_synovial_membrane | 0 .11 RPM | 384 .58 RPM |
SRP021940_testis | 0 .00 RPM | 642 .44 RPM |