RetrogeneDB ID: | retro_amel_214 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192355.1:3541695..3542031(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL40 | ||
Ensembl ID: | ENSAMEG00000011356 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.83 % |
Parental protein coverage: | 88.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
M.IFVKTLTGKT.TL...PSDT.ENVK.KIQ.KEGI..DQQ.LIF.G.........SD..IQKESTLHL. | |
Retrocopy | MHIFVKTLTGKTVTLKFKPSDTTENVKTKIQGKEGISLDQQHLIFVGNRWRMA-SHSDCIIQKESTLHLA |
Parental | LRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK |
L.LRG.....SL.Q.AQK.NC.KMIC.KC.A.L.P.AV..R.K | |
Retrocopy | LHLRG*HRPASLHQFAQK*NCNKMICPKCNAHLYPCAVTRRSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |