RetrogeneDB ID: | retro_shar_434 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL842713.1:12578..12911(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSSHAG00000007075 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458] |
Percent Identity: | 67.86 % |
Parental protein coverage: | 87.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLR |
.LE.EP.D..ENV..KIQDKE.IPPD.Q.LIF.GKQ..D..T.SDYNIQKESTL.LVL.L...IIE.SL. | |
Retrocopy | SLEIEPNDITENVQDKIQDKEIIPPD*QCLIFVGKQQKDS*TFSDYNIQKESTLNLVLHLQRDIIELSLF |
Parental | QLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKK |
QLAQKYN..KMI..KCY..LH.R.VNC..KK...TNNLRPKK | |
Retrocopy | QLAQKYNVTKMIWQKCYGHLHCRIVNCH-KK*DPTNNLRPKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |