RetrogeneDB ID: | retro_ecab_107 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:24467398..24467632(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000006913 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSECAG00000020660 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382] |
Percent Identity: | 98.7 % |
Parental protein coverage: | 60.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV | |
Retrocopy | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
Parental | LRLRGGI |
LRLRGG. | |
Retrocopy | LRLRGGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 48 .52 RPM | 321 .89 RPM |
SRP021940_cerebellum | 64 .71 RPM | 180 .83 RPM |
SRP021940_embryo | 16 .01 RPM | 494 .40 RPM |
SRP021940_placental_villous | 139 .14 RPM | 237 .96 RPM |
SRP021940_synovial_membrane | 44 .31 RPM | 384 .58 RPM |
SRP021940_testis | 139 .65 RPM | 642 .44 RPM |