RetrogeneDB ID: | retro_fcat_1382 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:155400361..155400699(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSFCAG00000009745 | ||
Aliases: | UBA52, CEP52, UBCEP2 | ||
Description: | Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P63052] |
Percent Identity: | 56.14 % |
Parental protein coverage: | 86.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVK-AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL |
..IF.KTL.GKT.TL...PSDT.EN.K..K..DKEGIPP.QQ...FA...LEDG.TLS.Y..Q...TLHL | |
Retrocopy | LRIFAKTLVGKTVTLKAGPSDTTENQK<TKVRDKEGIPPEQQLRVFASRWLEDGLTLSAYSSQEGATLHL |
Parental | VLRLRGGIIEPSLRQ--LAQKYNCDKMICRKCYARLHPRAVNCR |
VL.L.GGI..P.LR...LA.KYN..K.........LHPRA..CR | |
Retrocopy | VLHLCGGIPAPPLRRLALARKYNWGKVTRHRGSVHLHPRALTCR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 162 .11 RPM |
SRP017611_liver | 0 .00 RPM | 106 .65 RPM |