RetrogeneDB ID: | retro_rnor_2115 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:235318786..235319167(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Uba52 | ||
Ensembl ID: | ENSRNOG00000019974 | ||
Aliases: | Uba52, Rps27a, Ubb | ||
Description: | Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P62986] |
Percent Identity: | 76.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL |
MQIFVKTLTGKTITLEV.PSDTI.N.KAKIQDKEG.P.PD.QRLIF..KQLEDGRTLSDY.IQK.S..H. | |
Retrocopy | MQIFVKTLTGKTITLEVKPSDTIDNIKAKIQDKEGVP<PDHQRLIFDDKQLEDGRTLSDYDIQKVSS*HP |
Parental | VLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHT-NNLRPKKKVK |
V..L..GIIE.SL.QL.QKYNCDKMI..K..ARLHP.AVNC..KKCGH...NLRPKK.VK | |
Retrocopy | VQCLYDGIIELSLHQLVQKYNCDKMISCKHCARLHPCAVNCH-KKCGHS>KNLRPKKMVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 110 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 143 .75 RPM |
SRP017611_liver | 0 .00 RPM | 104 .08 RPM |