RetrogeneDB ID: | retro_ecab_835 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 5:47562573..47562875(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSECAG00000020660 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 78.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMIC |
K.KIQDK.G..PDQQ.LIF.GKQLEDG..LSD.N.QKES.LHLVL.L.G..I.PSL.QL..KY..DKM.C | |
Retrocopy | KLKIQDKGGLLPDQQHLIFLGKQLEDGHNLSDCNMQKESILHLVLHLWGHFI*PSLCQLT*KYSYDKMLC |
Parental | RKCYARLHPRAVNCRKK-KCGHTNNLRPKKKV |
.KCYA.LHP..VNC.KK.K..HTN.L.PKK.. | |
Retrocopy | YKCYAHLHPHSVNCHKK<KYSHTNKLCPKKVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 321 .89 RPM |
SRP021940_cerebellum | 0 .00 RPM | 180 .83 RPM |
SRP021940_embryo | 0 .00 RPM | 494 .40 RPM |
SRP021940_placental_villous | 0 .00 RPM | 237 .96 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 384 .58 RPM |
SRP021940_testis | 0 .00 RPM | 642 .44 RPM |