RetrogeneDB ID: | retro_ecab_857 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 5:30721795..30722118(-) | ||
Located in intron of: | ENSECAG00000012425 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSECAG00000020660 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382] |
Percent Identity: | 69.37 % |
Parental protein coverage: | 85.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL |
MQIF.KT.L.GKTI.LEVEP.DT.ENVK.KIQDK.GI...QQ.LIFAGKQLED...L...NIQ.EST..L | |
Retrocopy | MQIFMKT<LQGKTIILEVEPNDTSENVKTKIQDKKGII-SQQCLIFAGKQLEDRHSLTEHNIQTESTVYL |
Parental | VLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNC |
VL.L.GGII.PSL.QL.QK.NC..MI..K.YARLHP.AV.C | |
Retrocopy | VLHLWGGIIKPSLCQLTQKNNCYRMI-SKYYARLHPCAVHC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 321 .89 RPM |
SRP021940_cerebellum | 0 .16 RPM | 180 .83 RPM |
SRP021940_embryo | 0 .13 RPM | 494 .40 RPM |
SRP021940_placental_villous | 0 .10 RPM | 237 .96 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 384 .58 RPM |
SRP021940_testis | 0 .06 RPM | 642 .44 RPM |