Parental gene:

UBA52, ENSECAG00000020660

Aliases:None
Description:ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382]
Organism:Horse (Equus caballus)
Coordinates:21:3197423..3200007(+)


>ENSECAG00000020660
ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATTGAGAATGTTAA
AGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCC
GCACTCTCTCAGACTACAATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGGGGTGGCATCATTGAGCCT
TCCCTCCGCCAGCTCGCCCAGAAATACAACTGCGACAAGATGATTTGCCGCAAGTGTTATGCTCGCCTGCACCCTCGTGC
TGTCAACTGCCGCAAGAAGAAGTGCGGCCACACCAACAACCTGCGCCCCAAGAAGAAGGTCAAATAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 384 .58 RPM
SRP021940_embryo 494 .40 RPM
SRP021940_cerebellum 180 .83 RPM
SRP021940_testis 642 .44 RPM
SRP021940_placental_villous 237 .96 RPM
SRP021940_articular_cartilage 321 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011356 ortholog_one2one 10 retrogenes
retro_amel_1045, retro_amel_1416, retro_amel_1455, retro_amel_1759, retro_amel_1849, retro_amel_214, retro_amel_800, retro_amel_904, retro_amel_941, retro_amel_973,
Bos taurus ENSBTAG00000007737 ortholog_one2one 3 retrogenes
retro_btau_1059, retro_btau_1318, retro_btau_832,
Callithrix jacchus ENSCJAG00000007470 ortholog_one2one 22 retrogenes
retro_cjac_1363, retro_cjac_1388, retro_cjac_1426, retro_cjac_1485, retro_cjac_1521, retro_cjac_1561, retro_cjac_1731, retro_cjac_1743, retro_cjac_2002, retro_cjac_207, retro_cjac_2254, retro_cjac_2292, retro_cjac_2413, retro_cjac_2501, retro_cjac_2505, retro_cjac_2898, retro_cjac_3054, retro_cjac_658, retro_cjac_683, retro_cjac_883, retro_cjac_892, retro_cjac_898,
Felis catus ENSFCAG00000009745 ortholog_one2one 14 retrogenes
retro_fcat_1159, retro_fcat_1204, retro_fcat_1226, retro_fcat_1232, retro_fcat_1382, retro_fcat_1428, retro_fcat_1449, retro_fcat_1540, retro_fcat_1661, retro_fcat_86, retro_fcat_876, retro_fcat_909, retro_fcat_939, retro_fcat_989,
Homo sapiens ENSG00000221983 ortholog_one2one 2 retrogenes
retro_hsap_2622, retro_hsap_4004,
Latimeria chalumnae ENSLACG00000008132 ortholog_many2many 1 retrogene
retro_lcha_11,
Mustela putorius furo ENSMPUG00000015527 possible_ortholog 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 possible_ortholog 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Ochotona princeps ENSOPRG00000004784 ortholog_one2one 6 retrogenes
retro_opri_1016, retro_opri_144, retro_opri_219, retro_opri_458, retro_opri_644, retro_opri_787,
Pongo abelii ENSPPYG00000009746 ortholog_one2many 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Pan troglodytes ENSPTRG00000039223 ortholog_one2one 8 retrogenes
retro_ptro_1142, retro_ptro_1767, retro_ptro_2607, retro_ptro_2718, retro_ptro_2815, retro_ptro_792, retro_ptro_895, retro_ptro_919,
Rattus norvegicus ENSRNOG00000019974 ortholog_one2one 7 retrogenes
retro_rnor_1125, retro_rnor_1458, retro_rnor_2115, retro_rnor_2472, retro_rnor_2487, retro_rnor_2901, retro_rnor_944,
Sorex araneus ENSSARG00000000984 possible_ortholog 11 retrogenes
retro_sara_145, retro_sara_164, retro_sara_192, retro_sara_256, retro_sara_281, retro_sara_331, retro_sara_344, retro_sara_599, retro_sara_67, retro_sara_687, retro_sara_94,
Sarcophilus harrisii ENSSHAG00000007075 ortholog_one2one 3 retrogenes
retro_shar_405, retro_shar_434, retro_shar_703,
Ictidomys tridecemlineatus ENSSTOG00000004678 possible_ortholog 1 retrogene
retro_itri_49,
Xiphophorus maculatus ENSXMAG00000003911 ortholog_one2many 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_107 98.70 60.16
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2. retro_ecab_313 69.84 97.66
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3. retro_ecab_641 66.98 82.03
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4. retro_ecab_772 71.32 100.00
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5. retro_ecab_835 66.67 78.91
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6. retro_ecab_836 68.70 88.28
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7. retro_ecab_857 69.37 85.94
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8. retro_ecab_1014 86.05 100.00
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Download FASTA sequences of all ENSECAG00000020660 retrocopies