RetrogeneDB ID: | retro_mmus_1241 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:3735759..3736962(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000096450 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl3 | ||
Ensembl ID: | ENSMUSG00000060036 | ||
Aliases: | Rpl3, F2, J1 | ||
Description: | ribosomal protein L3 [Source:MGI Symbol;Acc:MGI:1351605] |
Percent Identity: | 82.59 % |
Parental protein coverage: | 99.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKK |
MSHRKFSAP.HGSLGFLP....SRH.GK.KS.PKDD.SKP.HLTAFLGYK..MTHI..EVDRPGSKVNKK | |
Retrocopy | MSHRKFSAPGHGSLGFLPHRHNSRHHGKMKSLPKDDPSKPIHLTAFLGYKGAMTHILWEVDRPGSKVNKK |
Parental | EVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDD |
EV.EAVTIVETPPMVVVGIV.YVETPRGL.TF.T.F.EHISDECKR.FYK.WHKSKK..FTKYC.KWQDD | |
Retrocopy | EVLEAVTIVETPPMVVVGIVRYVETPRGLWTFMTIFVEHISDECKRQFYKKWHKSKKTTFTKYCEKWQDD |
Parental | TGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQV |
TGKKQLE.DFNSMK.YCQ.IR.I.HTQM.LLPL.QK.AHLMEIQVNGGTVAE..DWA.E.LEQQVPVNQV | |
Retrocopy | TGKKQLENDFNSMKNYCQAIRMIVHTQMSLLPLSQK-AHLMEIQVNGGTVAENQDWAQEKLEQQVPVNQV |
Parental | FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI |
.GQD.MIDVI.VTKGKGYKGVTS.W.TKK.P.KTH..L.KVA.I.AW.PA..AFS.A.AGQKGYHH.TEI | |
Retrocopy | LGQDGMIDVISVTKGKGYKGVTSCWQTKKPPQKTHQSLHKVAWIRAWNPACAAFSMA*AGQKGYHH*TEI |
Parental | NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKS |
NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSIN.LGGFVHYGEVTNDFIM.KGCVV.TKK.VLTL.KS | |
Retrocopy | NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINSLGGFVHYGEVTNDFIMIKGCVVATKKGVLTLCKS |
Parental | LLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEG |
L.VQ.K..ALEKIDLKFIDT.SK..HG.FQTME.KKAFMGPLKKD.IAKEEG | |
Retrocopy | LQVQIKSQALEKIDLKFIDTASKLCHGHFQTMEDKKAFMGPLKKDIIAKEEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 182 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 112 .33 RPM |
SRP007412_heart | 0 .00 RPM | 83 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 150 .53 RPM |
SRP007412_liver | 0 .00 RPM | 142 .14 RPM |
SRP007412_testis | 0 .00 RPM | 55 .30 RPM |