RetrogeneDB ID: | retro_mmus_1465 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:47620503..47621272(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl3 | ||
Ensembl ID: | ENSMUSG00000060036 | ||
Aliases: | Rpl3, F2, J1 | ||
Description: | ribosomal protein L3 [Source:MGI Symbol;Acc:MGI:1351605] |
Percent Identity: | 73.28 % |
Parental protein coverage: | 64.52 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MSHRKF-SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNK |
.SHRKF..APR.GSLGFLP.K.SS.H.GK...F.KD...KPVH.TAFLGYK.GMT.IV.EVDRPGSKVNK | |
Retrocopy | ISHRKF<LAPRYGSLGFLPQKCSSWHHGKINRFSKDNPFKPVHFTAFLGYKVGMTYIVQEVDRPGSKVNK |
Parental | KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQD |
K.V.EAVTI.E.P.MVVV.IV.YVETP..L.T.KT...EHI.DEC..RFY.NWHKSKKK.FT.YCKK.Q. | |
Retrocopy | K*VMEAVTIMESPSMVVVCIVRYVETPPDLWTLKTIHDEHICDECEKRFYNNWHKSKKKNFTEYCKK*QA |
Parental | DTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQ |
DTGKK.LEKDFNSMKKY.QVI.IIAH.QM.LLPL..KKAHLMEIQVNG.T.AE.L.WARER.E..VP.NQ | |
Retrocopy | DTGKK*LEKDFNSMKKYWQVICIIAHIQMYLLPLCKKKAHLMEIQVNGDTGAERLHWARERPE--VPENQ |
Parental | VFGQDEMIDVIGVTKGKGYK-GVTSRWHTKKLPRKTHRGLRKVACIGAWHPA |
V.GQDEMIDV...TKGKGY..GVTS...TKKLP.K...GL.KVACIGAWHPA | |
Retrocopy | VYGQDEMIDVTSMTKGKGYQ<GVTSHRDTKKLP-KIL*GLLKVACIGAWHPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 182 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 112 .33 RPM |
SRP007412_heart | 0 .00 RPM | 83 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 150 .53 RPM |
SRP007412_liver | 0 .00 RPM | 142 .14 RPM |
SRP007412_testis | 0 .05 RPM | 55 .30 RPM |