RetrogeneDB ID: | retro_mmus_361 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:123757123..123757747(+) | ||
Located in intron of: | ENSMUSG00000036815 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl3 | ||
Ensembl ID: | ENSMUSG00000060036 | ||
Aliases: | Rpl3, F2, J1 | ||
Description: | ribosomal protein L3 [Source:MGI Symbol;Acc:MGI:1351605] |
Percent Identity: | 76.78 % |
Parental protein coverage: | 52.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVA |
LD...E.LEQQVPVNQVFGQDE.ID.I...K.KGYKGVTSRW.T.KL..KTH.GL..VAC.GAWHPA.V. | |
Retrocopy | LD*NLESLEQQVPVNQVFGQDEIIDIISMKKAKGYKGVTSRWYTEKLSQKTHWGLCNVACVGAWHPAHVS |
Parental | FSVARAGQKGYHHRTEINKKIYKIG-QGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIM |
FS.A.AGQK.Y....EINKKI.KIG.QGYLIKDGKLI..NA.TDYDLSDKS.NPLG.FVH.GEVTNDFIM | |
Retrocopy | FSEAQAGQKDYYQQIEINKKIFKIGGQGYLIKDGKLI--NAYTDYDLSDKSLNPLGDFVHHGEVTNDFIM |
Parental | LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEG |
LKGCVVGTKK..LTL.KSLLVQ.K.R.LEK.DLKFIDTTSKF.HG.FQTM.EKKAFMG.LK...IAKEEG | |
Retrocopy | LKGCVVGTKKQMLTLPKSLLVQNKHRVLEKTDLKFIDTTSKFSHGCFQTM-EKKAFMGSLKRNCIAKEEG |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 182 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 112 .33 RPM |
SRP007412_heart | 0 .00 RPM | 83 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 150 .53 RPM |
SRP007412_liver | 0 .00 RPM | 142 .14 RPM |
SRP007412_testis | 0 .18 RPM | 55 .30 RPM |