RetrogeneDB ID: | retro_mmus_2501 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:112955077..112956286(-) | ||
Located in intron of: | ENSMUSG00000087194 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083011 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl3 | ||
Ensembl ID: | ENSMUSG00000060036 | ||
Aliases: | Rpl3, F2, J1 | ||
Description: | ribosomal protein L3 [Source:MGI Symbol;Acc:MGI:1351605] |
Percent Identity: | 96.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKK |
MSH.KFSAPRHGSLGFLPRKRSSRH.GKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGS.VNKK | |
Retrocopy | MSHGKFSAPRHGSLGFLPRKRSSRHPGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSEVNKK |
Parental | EVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDD |
EVVEAVTIVE.PPMVVVGIVGYVE.PRGLRTFKTVFAEHIS.ECKRRFYKNWHKSKKKAFTKYCKKWQDD | |
Retrocopy | EVVEAVTIVENPPMVVVGIVGYVENPRGLRTFKTVFAEHISNECKRRFYKNWHKSKKKAFTKYCKKWQDD |
Parental | TGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQV |
TGKKQLEKDFNSMKKYCQVIRIIAHTQM.LLPL.QKKAH.MEI.VNGGTVAEKLDWARERLEQQVPVNQV | |
Retrocopy | TGKKQLEKDFNSMKKYCQVIRIIAHTQMHLLPLCQKKAHFMEIPVNGGTVAEKLDWARERLEQQVPVNQV |
Parental | FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI |
FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYH.RTEI | |
Retrocopy | FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEI |
Parental | NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKS |
NKKIYKI.QG.LIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVG.KKRVLTL.KS | |
Retrocopy | NKKIYKICQGHLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGAKKRVLTLCKS |
Parental | LLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA |
LLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMG.LKKDRIAKEEGA | |
Retrocopy | LLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGSLKKDRIAKEEGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .12 RPM | 182 .07 RPM |
SRP007412_cerebellum | 0 .04 RPM | 112 .33 RPM |
SRP007412_heart | 0 .03 RPM | 83 .24 RPM |
SRP007412_kidney | 0 .08 RPM | 150 .53 RPM |
SRP007412_liver | 0 .16 RPM | 142 .14 RPM |
SRP007412_testis | 0 .00 RPM | 55 .30 RPM |