RetrogeneDB ID: | retro_mmus_3270 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:43217142..43217555(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSMUSG00000060938 | ||
Aliases: | Rpl26, SIG-20 | ||
Description: | ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022] |
Percent Identity: | 87.05 % |
Parental protein coverage: | 95.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKK |
TSDRSK..KRHFNAPSHI.RKIMSSPLSKELR.KYNV.SMPI.KDDEVQVVRGHYKGQQIGKVVQVYRKK | |
Retrocopy | TSDRSKTSKRHFNAPSHIWRKIMSSPLSKELREKYNVPSMPIQKDDEVQVVRGHYKGQQIGKVVQVYRKK |
Parental | YVIYIERV-QREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE |
YVIYIE.V.Q.EKANG.TVHVGI.PSKV.ITRLKLD...KKILERKA.S.QVGKEKGKYKEE.IEKMQE | |
Retrocopy | YVIYIEQV<Q*EKANGITVHVGIYPSKVGITRLKLDTGHKKILERKATS*QVGKEKGKYKEEMIEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .19 RPM | 82 .07 RPM |
SRP007412_cerebellum | 0 .04 RPM | 43 .77 RPM |
SRP007412_heart | 0 .16 RPM | 61 .58 RPM |
SRP007412_kidney | 0 .42 RPM | 56 .40 RPM |
SRP007412_liver | 1 .04 RPM | 60 .43 RPM |
SRP007412_testis | 0 .00 RPM | 61 .02 RPM |