RetrogeneDB ID: | retro_mmus_3361 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:80043876..80044122(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSMUSG00000060938 | ||
Aliases: | Rpl26, SIG-20 | ||
Description: | ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022] |
Percent Identity: | 78.05 % |
Parental protein coverage: | 56.55 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPS |
PL......K.NV.SM.I.KDDEVQVVRGHYKGQQIGKV.QV.RK.YVIYI..VQ.EKANGTTVHV.IHPS | |
Retrocopy | PLFPKS*DK*NVWSMHI*KDDEVQVVRGHYKGQQIGKVAQVFRKNYVIYIKQVQ*EKANGTTVHVDIHPS |
Parental | KVVITRLKLDKD |
KVVITRLKL.KD | |
Retrocopy | KVVITRLKLGKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 82 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .77 RPM |
SRP007412_heart | 0 .00 RPM | 61 .58 RPM |
SRP007412_kidney | 0 .00 RPM | 56 .40 RPM |
SRP007412_liver | 0 .00 RPM | 60 .43 RPM |
SRP007412_testis | 0 .00 RPM | 61 .02 RPM |