RetrogeneDB ID: | retro_ggor_270 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:100241992..100242398(+) | ||
Located in intron of: | ENSGGOG00000024435 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000161970 | ||
Ensembl ID: | ENSGGOG00000023944 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.21 % |
Parental protein coverage: | 88.24 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | KFNPFVTSDRSK-NRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
KFN.FVTSD......KR.FNAPSH..R.IMSSPLSKELR.KYNV.SMPI.KDDEVQVV.GH.K.QQ.GKV | |
Retrocopy | KFNSFVTSDSKN>SHKRYFNAPSHVHRTIMSSPLSKELR*KYNV*SMPI*KDDEVQVV*GH*KVQQVGKV |
Parental | VQVYRKKYVIYIERVQR-EK--ANGTTVHVGIH-PSKVVITRLKLDKDRK-KILERKAKSRQVGKEKNTR |
VQ.YRK.YVIYIERVQ..EK..AN.TT..VGI..PSKVVI.RL...K..K.KILE.KAKS.QVGKE.... | |
Retrocopy | VQGYRKNYVIYIERVQQ<EKDWANRTTIRVGIA<PSKVVI-RLEVKKTHK<KILEWKAKSHQVGKEQDKH |
Parental | K |
K | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 27 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 34 .39 RPM |
SRP007412_heart | 0 .00 RPM | 14 .35 RPM |
SRP007412_kidney | 0 .00 RPM | 78 .02 RPM |
SRP007412_liver | 0 .11 RPM | 74 .83 RPM |
SRP007412_testis | 0 .00 RPM | 44 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_191 |
Macaca mulatta | retro_mmul_398 |