RetrogeneDB ID: | retro_mmus_1642 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:51484289..51484723(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSMUSG00000060938 | ||
Aliases: | Rpl26, SIG-20 | ||
Description: | ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022] |
Percent Identity: | 81.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQ-KYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
.K.NPFVTSD.S.N.KRHFN.PS.I.RKIMSSPLSK.LRQ..YNV.SMPI.KDDEVQVV.GHYKGQQIGK | |
Retrocopy | IKLNPFVTSDQSQNHKRHFNVPSLI*RKIMSSPLSKKLRQ<EYNVLSMPIQKDDEVQVVQGHYKGQQIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEET |
VVQVYRK.Y.IYIE.VQ.EKANGTTVHV.IHPSKV.ITRLKL.KD.KKILE.K.KSRQ.GKEKGK.KEET | |
Retrocopy | VVQVYRKEYAIYIELVQ*EKANGTTVHVSIHPSKVGITRLKLEKDHKKILELKTKSRQAGKEKGKNKEET |
Parental | IEKMQE |
.EKMQE | |
Retrocopy | MEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 82 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .77 RPM |
SRP007412_heart | 0 .00 RPM | 61 .58 RPM |
SRP007412_kidney | 0 .00 RPM | 56 .40 RPM |
SRP007412_liver | 0 .00 RPM | 60 .43 RPM |
SRP007412_testis | 0 .00 RPM | 61 .02 RPM |