RetrogeneDB ID: | retro_rnor_213 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:121934466..121934904(-) | ||
Located in intron of: | ENSRNOG00000024907 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000032777 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSRNOG00000004214 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001099258] |
Percent Identity: | 97.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTSDRSKNRK.HFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDD.VQVVRGHYKGQQIGKV | |
Retrocopy | MKFNPFVTSDRSKNRKCHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDKVQVVRGHYKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
VQVYRKKY.IYIERVQREKANGTTVHVGIHPSKVVITRLKLDKD.KKILERKAKSRQVGKEKGKYKEETI | |
Retrocopy | VQVYRKKYIIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDCKKILERKAKSRQVGKEKGKYKEETI |
Parental | EKMQE |
EKMQE | |
Retrocopy | EKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 44 .36 RPM |
SRP017611_kidney | 0 .49 RPM | 62 .25 RPM |
SRP017611_liver | 0 .13 RPM | 45 .59 RPM |