RetrogeneDB ID: | retro_mmus_2011 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:14626890..14627323(-) | ||
Located in intron of: | ENSMUSG00000057914 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000070271 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSMUSG00000060938 | ||
Aliases: | Rpl26, SIG-20 | ||
Description: | ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022] |
Percent Identity: | 95.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTSDRSKNRKRHF.APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV | |
Retrocopy | MKFNPFVTSDRSKNRKRHFSAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKG-KYKEET |
VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSR...K..G.KYKEET | |
Retrocopy | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRR-RKGEG>KYKEET |
Parental | IEKMQE |
IEKMQE | |
Retrocopy | IEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 82 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .77 RPM |
SRP007412_heart | 0 .06 RPM | 61 .58 RPM |
SRP007412_kidney | 0 .08 RPM | 56 .40 RPM |
SRP007412_liver | 0 .03 RPM | 60 .43 RPM |
SRP007412_testis | 0 .00 RPM | 61 .02 RPM |