RetrogeneDB ID:

retro_nleu_901

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397276.1:4303803..4304165(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSNLEG00000026615
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_901
ATGGCAAGAAAAGCTGGCAATTTCTATATACCTGTGAAGCCCAAATTGTCACTTGCCTTAAGGATCAAATGTATCAATGG
TGTGAGTCCAAGTCTGTCGCAACTTCTTCACTTTCCCCAGATCTTCAATGGCACCTTTGTTAAACTCAACAAGGCTTCAG
TTAACATGCTGAGGATTGTGGAACCATATCGCATGGAGTACCTGAACCTGACATCAATAAATGAACTGATCTACAAATTG
GTTATGGCAAAACCAATAAACAAATTACCTTAACAGATAACTCTTTGATTGCTAGATTTCTTGATAAATATGGCATCATC
TGACTGAAGAATCTGATTCATGAGATCTATGCTGTTGAAAAA

ORF - retro_nleu_901 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.72 %
Parental protein coverage: 59.43 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWG
MARKAGNFY.P..PKL....RI..INGVSP......QLL...QIFNGTFVKLNKAS.NMLRIVEPY....
RetrocopyMARKAGNFYIPVKPKLSLALRIKCINGVSPSLS---QLLHFPQIFNGTFVKLNKASVNMLRIVEPY-RME
ParentalYPNLKSVNELIYKR-GYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGK
Y.NL.S.NELIYK..GYGK.N.K.I.LTDN.LIAR.L.KYGII....LIHEIY.V.K
RetrocopyYLNLTSINELIYKL<GYGKTN-KQITLTDNSLIARFLDKYGII*LKNLIHEIYAVEK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_901 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 115 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG0000000414018 retrocopies
Erinaceus europaeus ENSEEUG000000103073 retrocopies
Echinops telfairi ENSETEG0000000565633 retrocopies
Latimeria chalumnae ENSLACG000000035711 retrocopy
Macropus eugenii ENSMEUG000000163199 retrocopies
Monodelphis domestica ENSMODG000000071364 retrocopies
Mustela putorius furoENSMPUG0000001024015 retrocopies
Nomascus leucogenys ENSNLEG0000000464921 retrocopies
Nomascus leucogenys ENSNLEG00000026615 8 retrocopies
Sorex araneus ENSSARG000000010883 retrocopies



Copyright © RetrogeneDB 2014-2017