RetrogeneDB ID: | retro_ggor_1009 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:72740777..72741512(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSGGOG00000009958 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MAEQEQRKIPLVPENLLKKRKAYQALKATQAKQALLAKKEQKKGKGLRFKRLESFLHDSWRQKRDKVRLR |
MAEQEQRKIP.VPENLLKKR.A.QAL.ATQAKQALLAK.EQ.KG.GLRFK.LESFLHD...QKRDKVRLR | |
Retrocopy | MAEQEQRKIP*VPENLLKKRVANQALRATQAKQALLAK-EQRKGNGLRFKQLESFLHDF*QQKRDKVRLR |
Parental | RLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTW |
.LE.K...LELPDKHSLAFVV.I.RIDGVSLLV..TIARL.L.K.FSGVFV.VT..NLKML..VE.YVT. | |
Retrocopy | *LEAKIPTLELPDKHSLAFVVGIKRIDGVSLLVRKTIARLHLRKSFSGVFVNVTHRNLKMLLLVETYVT* |
Parental | GFPNLKSVRELILKHGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFH |
GFPNLKSVRELILKHGQAKVK.KTIPLTDNTVIEEHLGKFGVICLE.LIHEIAFP.KHFQEISWFL.PFH | |
Retrocopy | GFPNLKSVRELILKHGQAKVKCKTIPLTDNTVIEEHLGKFGVICLENLIHEIAFPEKHFQEISWFLHPFH |
Parental | LSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN |
LSVA.HATKN.V.FLKE...PG..G.R.NQLI.QLN | |
Retrocopy | LSVACHATKNTVDFLKEVNSPGHQGKRTNQLIHQLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 37 .69 RPM |
SRP007412_cerebellum | 0 .00 RPM | 31 .64 RPM |
SRP007412_heart | 0 .00 RPM | 9 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 48 .41 RPM |
SRP007412_liver | 0 .00 RPM | 36 .48 RPM |
SRP007412_testis | 0 .00 RPM | 33 .77 RPM |