RetrogeneDB ID: | retro_ggor_2282 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:100912277..100912976(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSGGOG00000009958 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.3 % |
Parental protein coverage: | 92.34 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | RKAYQALKATQAKQALLAKKEQKKGKGLRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAF |
RKAYQALKATQAKQ.LLAKKEQ.KGK.LRFKRLE.FLHDS..QKRDKV.LR.LEVKPHALELPDKHSLAF | |
Retrocopy | RKAYQALKATQAKQTLLAKKEQRKGK*LRFKRLEFFLHDSQQQKRDKVHLR*LEVKPHALELPDKHSLAF |
Parental | VVRIESIRIDG----VSLLVQRIIARLRLKKIFSGVFVKVTP--QNLKMLCIVEPYVTWGFPNLKSVREL |
VV.IE..RIDG....V.....R..........F.......TP..QNLKML.IVEPYVTWGFPNLKSV..L | |
Retrocopy | VVCIE--RIDGMSLLVQRTIARLHVKKIFSGVFVKAISPPTPATQNLKML*IVEPYVTWGFPNLKSVW*L |
Parental | ILKHGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNR |
ILK..QAKV.NKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFL.PFHLS.A.HATK.R | |
Retrocopy | ILKCRQAKVNNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLHPFHLSMALHATKRR |
Parental | VGFLKEMGTPGYRGERINQLIRQLN |
VGFLKEMGTPGYRGE.INQLI.QLN | |
Retrocopy | VGFLKEMGTPGYRGEHINQLIHQLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 37 .69 RPM |
SRP007412_cerebellum | 0 .00 RPM | 31 .64 RPM |
SRP007412_heart | 0 .00 RPM | 9 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 48 .41 RPM |
SRP007412_liver | 0 .00 RPM | 36 .48 RPM |
SRP007412_testis | 0 .00 RPM | 33 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3373 |
Pan troglodytes | retro_ptro_2293 |