RetrogeneDB ID: | retro_ggor_2099 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:85778595..85779219(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSGGOG00000009958 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.17 % |
Parental protein coverage: | 84.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | KEQKKGKGLRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIA |
....K.K.LRFKRLESF.HDSWRQK.DK.RLR.LEVKPHALELPD.HSLAFV..I.RIDGVSLLVQRTIA | |
Retrocopy | QRRSKEKELRFKRLESFQHDSWRQKHDKLRLRQLEVKPHALELPDEHSLAFVMCIKRIDGVSLLVQRTIA |
Parental | RLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVREL-ILKHGQAKVKNKTIPLTDNTVIEEHL |
RLRLKKIF.GVFVK.TP.NLKMLRIVEPYVT.GFPNLKSV.E..ILK.GQAKVKNKTI.LT.NTVIEEHL | |
Retrocopy | RLRLKKIFNGVFVKATPKNLKMLRIVEPYVT*GFPNLKSVQEF*ILKRGQAKVKNKTISLTENTVIEEHL |
Parental | GKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQL |
GKFGVICLEDLIHEIAFPGKHFQE.S.FL.PFH.SVA.HATKNRVGFLKEMG..GY.GE.IN.LI.QL | |
Retrocopy | GKFGVICLEDLIHEIAFPGKHFQESSCFLCPFHHSVAHHATKNRVGFLKEMGRAGYQGECIN*LICQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 37 .69 RPM |
SRP007412_cerebellum | 0 .20 RPM | 31 .64 RPM |
SRP007412_heart | 0 .00 RPM | 9 .07 RPM |
SRP007412_kidney | 0 .08 RPM | 48 .41 RPM |
SRP007412_liver | 0 .05 RPM | 36 .48 RPM |
SRP007412_testis | 0 .00 RPM | 33 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3053 |
Pan troglodytes | retro_ptro_1987 |
Pongo abelii | retro_pabe_2527 |