RetrogeneDB ID: | retro_ggor_1261 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 16:31287672..31288165(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSGGOG00000009958 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.9 % |
Parental protein coverage: | 67.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAEQEQRKIPLVPENLLKKRKAYQALKATQAKQALLAKKEQKKGKGLRFKRLESFLHDSWRQKRDKVRL- |
MAEQEQRKIPLVPENLLK.RKAYQALKATQAKQA.LAK.EQ.KGKGLRFK.LESFLHDSW..KRDKV.L. | |
Retrocopy | MAEQEQRKIPLVPENLLKNRKAYQALKATQAKQAFLAK-EQRKGKGLRFK*LESFLHDSWQEKRDKVHL> |
Parental | RRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVK-VTPQNLKMLRIVEPYV |
R.LEV.PHALELPDK.SLAFVVRI.RIDG.SLLVQRTIARL.LKKIFSGVFVK.VTPQNLKML.IVEPYV | |
Retrocopy | RQLEVQPHALELPDKCSLAFVVRIKRIDGGSLLVQRTIARLCLKKIFSGVFVK>VTPQNLKMLLIVEPYV |
Parental | TWGFPNL-KSVRELILKHGQAKVKNKTI |
T.GFPNL..SV.E.ILKHGQAKVKNKTI | |
Retrocopy | T*GFPNL<QSVWEFILKHGQAKVKNKTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 37 .69 RPM |
SRP007412_cerebellum | 0 .04 RPM | 31 .64 RPM |
SRP007412_heart | 0 .03 RPM | 9 .07 RPM |
SRP007412_kidney | 0 .12 RPM | 48 .41 RPM |
SRP007412_liver | 0 .05 RPM | 36 .48 RPM |
SRP007412_testis | 0 .00 RPM | 33 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1379 |