RetrogeneDB ID: | retro_opri_565 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_17463:13944..14277(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL35 | ||
Ensembl ID: | ENSOPRG00000000406 | ||
Aliases: | None | ||
Description: | ribosomal protein L35 [Source:HGNC Symbol;Acc:10344] |
Percent Identity: | 75.68 % |
Parental protein coverage: | 90.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLD |
.KEELLK.LD.LK.EL.QL..A.VT..A..KLS.I.V..KSIAR.LTV.NQTQKENLRKFYKGK.Y.PLD | |
Retrocopy | RKEELLKHLDHLKMELWQLCIAEVTSSAVYKLSRICVFHKSIARMLTVVNQTQKENLRKFYKGK*YNPLD |
Parental | LRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA |
LRPKKT.AM.R.LNKHEENLKTKKQQ.KE.LY.LRKYA.KA | |
Retrocopy | LRPKKTCAMCRCLNKHEENLKTKKQQQKELLYLLRKYAGKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |