RetrogeneDB ID: | retro_ptro_2609 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 7:25858475..25858834(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL35 | ||
Ensembl ID: | ENSPTRG00000021361 | ||
Aliases: | None | ||
Description: | ribosomal protein L35 [Source:HGNC Symbol;Acc:10344] |
Percent Identity: | 75.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKEN-L |
MAKIKARDL....KEELLKQLDDLKVELSQLRVAKVTGGAASKLSKI.VVRK.............K.N.L | |
Retrocopy | MAKIKARDLH--EKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKI*VVRK-LDVFSRLLTRLRKRN<L |
Parental | RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA |
RKFYKGKKYKPLDL.PKKTRAM..R.NKH.ENLKTKK.QRKERL..LR..AVKA | |
Retrocopy | RKFYKGKKYKPLDLWPKKTRAMCCRFNKHKENLKTKKRQRKERLCLLRQCAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 119 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 156 .98 RPM |
SRP007412_heart | 0 .00 RPM | 87 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 266 .72 RPM |
SRP007412_liver | 0 .00 RPM | 363 .51 RPM |
SRP007412_testis | 0 .00 RPM | 120 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3832 |
Gorilla gorilla | retro_ggor_2581 |
Pongo abelii | retro_pabe_3064 |
Macaca mulatta | retro_mmul_1623 |