RetrogeneDB ID: | retro_ptro_2607 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 7:24277425..24277806(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSPTRG00000039223 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTLTGKTITLEVEPSDT.ENVKAKIQDKEGIP.DQQRLIFAGKQLEDGRTL.D.NIQKES.LHL. | |
Retrocopy | MQIFVKTLTGKTITLEVEPSDTTENVKAKIQDKEGIPLDQQRLIFAGKQLEDGRTLLDCNIQKESILHLG |
Parental | LRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK |
L.L.GGIIEPSL.QLAQKYNCDKMICRKC.A.LHPRAVNCR.KK.GHTNNL.PK.K.K | |
Retrocopy | LHL*GGIIEPSLCQLAQKYNCDKMICRKCCAHLHPRAVNCR-KK*GHTNNLCPKRKIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 188 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 178 .60 RPM |
SRP007412_heart | 0 .00 RPM | 146 .26 RPM |
SRP007412_kidney | 0 .00 RPM | 393 .01 RPM |
SRP007412_liver | 0 .00 RPM | 292 .71 RPM |
SRP007412_testis | 0 .00 RPM | 196 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2579 |
Macaca mulatta | retro_mmul_1625 |
Callithrix jacchus | retro_cjac_3054 |