RetrogeneDB ID: | retro_tbel_410 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1976:111650..112173(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 71.11 % |
Parental protein coverage: | 87.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKN-PEVPV-NFAEFSKKCSERWKTMSGREKSKFDEM-KADK |
.AKGDPK.PKG..SAYAFFVQTCREEHK.KN.PEVPV....EFSKKCSERW.T.SG.E..K.DEM.K.DK | |
Retrocopy | VAKGDPKNPKGTLSAYAFFVQTCREEHKEKN<PEVPV<HCGEFSKKCSERWETTSGEERPKSDEMAKVDK |
Parental | VRYDREMKDYGPAKGAKKKKDPN-PK-RPPSGFFLFCSEFRPKIKSTNPGISIG-DVAKKLGEMWNNLSD |
.R.DREMK..GPA.G..K.KDP..P..RPPSGFFLF..EF.PKIKSTN.GISI..DVAKKLGE.WN.LSD | |
Retrocopy | ARCDREMKVEGPAQGGTKRKDPSAPQ>RPPSGFFLFSAEFCPKIKSTNSGISIE<DVAKKLGETWNDLSD |
Parental | SEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
.EKQP.ITKAA.LKE..E.D.AD..S.GK..GA.GPAK.A | |
Retrocopy | YEKQPPITKAATLKEDQE-DAADHESTGKRGGAQGPAKIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |