RetrogeneDB ID: | retro_tbel_2543 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_112762:3632..3946(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 60.55 % |
Parental protein coverage: | 51.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | EVPVNFAEFSKKCSERWKTMSGREKSKFDEMK-ADKVRYDREMKDYGPAKGAKKKKDPN-PKRPPSGFFL |
EVPVNFAEFSKKC..R.KTMSG.EKSK.DEM..AD.V.YD.EM.D.GPAK...KKK..N.PK........ | |
Retrocopy | EVPVNFAEFSKKCFKR*KTMSGKEKSKLDEMAIADEVHYDWEM-DCGPAKDGQKKKYLNAPKNKITVLDS |
Parental | FCS--EFRPK-IKSTNPGISIG-DVAKKLGE-MWNNLSD |
.CS...F.P..IKS..PGIS.....AKKLGE..W.NLSD | |
Retrocopy | SCSVQNFTPR<IKSSSPGISPR<SLAKKLGE>IWSNLSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |