RetrogeneDB ID: | retro_tbel_4209 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_71907:8543..9066(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 71.67 % |
Parental protein coverage: | 87.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKN-PEVPV-NFAEFSKKCSERWKTMSGREKSKFDEM-KADK |
.AK.DPKKPKG..SAYAFFVQTCREEHK.KN.PEVPV....EFSKKCSERW.T.SG.E..K.DEM.KADK | |
Retrocopy | VAKDDPKKPKGTLSAYAFFVQTCREEHKEKN<PEVPV<RCGEFSKKCSERWETTSGKERPKSDEMAKADK |
Parental | VRYDREMKDYGPAKGAKKKKDPN-PK-RPPSGFFLFCSEFRPKIKSTNPGISIG-DVAKKLGEMWNNLSD |
.R.DREMKD.GPA.G..K.KDP..P..RPPSGFFLF..EFRPKIKS.N.GISI..DVAKKL.E.WN.L.D | |
Retrocopy | ARCDREMKDEGPAQGGTKRKDPSAPQ>RPPSGFFLFSAEFRPKIKSANSGISIE<DVAKKLSETWNDLGD |
Parental | SEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
.EKQP.ITKAA.LKE..E.DVAD..S.GK..GA.GPAK.A | |
Retrocopy | NEKQPPITKAATLKEDQE-DVADHESTGKRGGAQGPAKIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |