Parental gene:

HSPE1, ENSGGOG00000027944

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:2b:85859933..85862756(+)


>ENSGGOG00000027944
ATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAGACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 66 .03 RPM
SRP007412_cerebellum 33 .29 RPM
SRP007412_heart 38 .15 RPM
SRP007412_kidney 204 .49 RPM
SRP007412_liver 113 .82 RPM
SRP007412_testis 58 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007417 possible_ortholog 17 retrogenes
retro_chof_1048, retro_chof_1160, retro_chof_143, retro_chof_1476, retro_chof_1561, retro_chof_1755, retro_chof_1880, retro_chof_2052, retro_chof_2053, retro_chof_226, retro_chof_303, retro_chof_414, retro_chof_420, retro_chof_86, retro_chof_907, retro_chof_91, retro_chof_940,
Callithrix jacchus ENSCJAG00000004008 ortholog_one2many 1 retrogene
retro_cjac_254,
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2many 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Erinaceus europaeus ENSEEUG00000005040 possible_ortholog 6 retrogenes
retro_eeur_132, retro_eeur_278, retro_eeur_474, retro_eeur_611, retro_eeur_657, retro_eeur_698,
Mus musculus ENSMUSG00000073676 possible_ortholog 11 retrogenes
retro_mmus_1005, retro_mmus_1719, retro_mmus_1750, retro_mmus_1934, retro_mmus_2483, retro_mmus_2485, retro_mmus_301, retro_mmus_3077, retro_mmus_386, retro_mmus_872, retro_mmus_877,
Procavia capensis ENSPCAG00000009541 ortholog_one2one 1 retrogene
retro_pcap_330,
Sus scrofa ENSSSCG00000016078 ortholog_one2many 7 retrogenes
retro_sscr_103, retro_sscr_1059, retro_sscr_106, retro_sscr_1088, retro_sscr_294, retro_sscr_298, retro_sscr_401,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_117 93.68 93.14
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2. retro_ggor_157 91.00 98.04
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3. retro_ggor_775 84.31 100.00
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4. retro_ggor_841 70.41 94.12
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5. retro_ggor_897 91.18 100.00
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6. retro_ggor_1051 95.10 100.00
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7. retro_ggor_1243 95.19 100.00
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8. retro_ggor_1545 75.27 89.22
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9. retro_ggor_1676 64.76 100.00
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10. retro_ggor_1821 84.38 94.12
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11. retro_ggor_1956 58.46 61.76
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12. retro_ggor_1957 62.50 58.82
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13. retro_ggor_1958 72.16 92.16
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14. retro_ggor_2331 77.67 100.00
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15. retro_ggor_2391 57.00 96.08
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16. retro_ggor_2476 71.84 100.00
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17. retro_ggor_2492 57.00 96.08
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Download FASTA sequences of all ENSGGOG00000027944 retrocopies