RetrogeneDB ID: | retro_eeur_132 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_8313:24213..24390(-) | ||
Located in intron of: | ENSEEUG00000013355 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSEEUG00000005040 | ||
Aliases: | None | ||
Description: | heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] |
Percent Identity: | 77.97 % |
Parental protein coverage: | 59. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TAVAAXXXXXXXXTGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
T..A.........TGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLF.DGDILGK.VD | |
Retrocopy | TTLAVVSSGSKGKTGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLF*DGDILGKSVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 13 .21 RPM |
SRP017611_kidney | 0 .19 RPM | 58 .32 RPM |
SRP017611_liver | 0 .00 RPM | 43 .09 RPM |