RetrogeneDB ID: | retro_mmus_1934 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:72955897..72956191(+) | ||
Located in intron of: | ENSMUSG00000027109 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084213 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspe1 | ||
Ensembl ID: | ENSMUSG00000073676 | ||
Aliases: | Hspe1, 10kDa, Hsp10, mt-cpn10 | ||
Description: | heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680] |
Percent Identity: | 88.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSVKVGDK |
MAGQAF.K.L.L.DRVLVERSA.ETVT...IMLPEKSQGKVLQAT.VAVGSG.KGKSGEI.PVSVKVGDK | |
Retrocopy | MAGQAFEKPLLLSDRVLVERSASETVT---IMLPEKSQGKVLQATIVAVGSGKKGKSGEIGPVSVKVGDK |
Parental | VLLPEYGGTKVVLDDKDYFLFRDSDILGKYVD |
V.LPEYGGTKVVLDDKDYFLFRDSDILGKYVD | |
Retrocopy | V-LPEYGGTKVVLDDKDYFLFRDSDILGKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 19 .06 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .80 RPM |
SRP007412_heart | 0 .00 RPM | 39 .32 RPM |
SRP007412_kidney | 0 .08 RPM | 64 .04 RPM |
SRP007412_liver | 0 .03 RPM | 64 .07 RPM |
SRP007412_testis | 0 .05 RPM | 5 .95 RPM |