RetrogeneDB ID:

retro_ggor_2476

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:134148005..134148310(-)
Located in intron of:ENSGGOG00000013499
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HSPE1
Ensembl ID:ENSGGOG00000027944
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2476
CTGGCCGGACAGGTATTTAGAAAATGTCTTCCCCTCTTTGACCAAGTATTGGCTGAAAGGAGTGCAGTCCAAACTGTAAC
CAAAGGAGGCATTATGCTTCCTGAAAAACATCCAGCAAAGGCATTGCAAGCAATGATAGTAACTGCTGGACTGGGCTTTA
AGGAAAAGAGTGGAGAGATTTTACCCATTAGCATAAGGGTTGGAAATAAAGTTTTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAAATGATGAGATTATTTCTTATTTAGAGATGGTGACATACTTGGAAAGTCCGTAGAC

ORF - retro_ggor_2476 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.84 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDK
.AGQ.FRK.LPLFD.VL.ERSA..TVTKGGIMLPEK...K.LQA..V..G.G.K.K.GEI.P.S..VG.K
RetrocopyLAGQVFRKCLPLFDQVLAERSAVQTVTKGGIMLPEKHPAKALQAMIVTAGLGFKEKSGEILPISIRVGNK
ParentalVLLPEYGGTKVVLDDK-DYFLFRDGDILGKYVD
V.LPEYGGTKVVL.D..DYFLFRDGDILGK.VD
RetrocopyVFLPEYGGTKVVLNDE<DYFLFRDGDILGKSVD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 66 .03 RPM
SRP007412_cerebellum 0 .04 RPM 33 .29 RPM
SRP007412_heart 0 .06 RPM 38 .15 RPM
SRP007412_kidney 0 .04 RPM 204 .49 RPM
SRP007412_liver 0 .00 RPM 113 .82 RPM
SRP007412_testis 0 .00 RPM 58 .53 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2476 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2476 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3664
Pan troglodytes retro_ptro_2485
Sus scrofa retro_sscr_106
Sus scrofa retro_sscr_103

Parental genes homology:
Parental genes homology involve 8 parental genes, and 87 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG0000000741717 retrocopies
Callithrix jacchus ENSCJAG000000040081 retrocopy
Dasypus novemcinctus ENSDNOG0000001324627 retrocopies
Erinaceus europaeus ENSEEUG000000050406 retrocopies
Gorilla gorilla ENSGGOG00000027944 17 retrocopies
Mus musculus ENSMUSG0000007367611 retrocopies
Procavia capensis ENSPCAG000000095411 retrocopy
Sus scrofa ENSSSCG000000160787 retrocopies



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