RetrogeneDB ID: | retro_mmus_1005 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:37582285..37582561(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspe1 | ||
Ensembl ID: | ENSMUSG00000073676 | ||
Aliases: | Hspe1, 10kDa, Hsp10, mt-cpn10 | ||
Description: | heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680] |
Percent Identity: | 60.82 % |
Parental protein coverage: | 93.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKG-KSGEIEPVSVKVGDKV-LLPE |
KFL.LFDR.LVER..A.TVTKGG..LPEKSQGK..Q....AV...G.G.....I.PVS.K...K...LPE | |
Retrocopy | KFLLLFDRELVERDVAKTVTKGGLTLPEKSQGKAFQE---AVEAVGLG>RNEGIQPVSMKYMEKK<VLPE |
Parental | YGGTKVVLDDKDYFLFRDSDILGKYVD |
YGGTKVVLDD.DY....D.DI.GK.VD | |
Retrocopy | YGGTKVVLDDEDYL*CTDGDIFGK*VD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 19 .06 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .80 RPM |
SRP007412_heart | 0 .00 RPM | 39 .32 RPM |
SRP007412_kidney | 0 .02 RPM | 64 .04 RPM |
SRP007412_liver | 0 .00 RPM | 64 .07 RPM |
SRP007412_testis | 0 .05 RPM | 5 .95 RPM |