RetrogeneDB ID: | retro_eeur_474 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_319269:6470..6659(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSEEUG00000005040 | ||
Aliases: | None | ||
Description: | heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] |
Percent Identity: | 60.32 % |
Parental protein coverage: | 63. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RVLLTAVAAXXXXXXXXTGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
.VL...V.A.........GEIQPVSVK..DKVL..E..G.KVVLDD..YFL.RDGDILGK.VD | |
Retrocopy | KVLQAIVIALGYGSKGKFGEIQPVSVKIKDKVLMAENRGNKVVLDDRVYFLYRDGDILGK*VD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 58 .32 RPM |
SRP017611_liver | 0 .00 RPM | 43 .09 RPM |