Parental gene:

HSPE1, ENSCHOG00000007417

Aliases:None
Description:heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_4274:16475..18294(+)


>ENSCHOG00000007417
ATGGCAGGACAGGCGTTTAGAAAGTTTCTTCCCCTCTTTGATCGAGTATTGGTTGAAAGGAGTGCAGCCGAAACTGTAAC
TAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTGTTGCAAGCAACAGTATTAGCTGTTGGATCGGGAGCTA
AAGGAAAGGGTGGACAGATTGAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGAAGAAAAGGAGTATTTCTTATTTAGAGATAGTGACATTCTTGGGAAGTATATAGAGTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013769 possible_ortholog 18 retrogenes
retro_amel_1027, retro_amel_1083, retro_amel_1084, retro_amel_1100, retro_amel_133, retro_amel_1504, retro_amel_1513, retro_amel_1623, retro_amel_1699, retro_amel_1819, retro_amel_199, retro_amel_23, retro_amel_269, retro_amel_310, retro_amel_329, retro_amel_491, retro_amel_506, retro_amel_922,
Canis familiaris ENSCAFG00000010890 possible_ortholog 4 retrogenes
retro_cfam_1768, retro_cfam_1883, retro_cfam_208, retro_cfam_556,
Callithrix jacchus ENSCJAG00000004008 possible_ortholog 1 retrogene
retro_cjac_254,
Felis catus ENSFCAG00000014455 possible_ortholog 9 retrogenes
retro_fcat_114, retro_fcat_1174, retro_fcat_1406, retro_fcat_1686, retro_fcat_1723, retro_fcat_457, retro_fcat_681, retro_fcat_794, retro_fcat_97,
Gorilla gorilla ENSGGOG00000027944 possible_ortholog 17 retrogenes
retro_ggor_1051, retro_ggor_117, retro_ggor_1243, retro_ggor_1545, retro_ggor_157, retro_ggor_1676, retro_ggor_1821, retro_ggor_1956, retro_ggor_1957, retro_ggor_1958, retro_ggor_2331, retro_ggor_2391, retro_ggor_2476, retro_ggor_2492, retro_ggor_775, retro_ggor_841, retro_ggor_897,
Loxodonta africana ENSLAFG00000000057 possible_ortholog 1 retrogene
retro_lafr_69,
Macaca mulatta ENSMMUG00000010491 possible_ortholog 1 retrogene
retro_mmul_344,
Mus musculus ENSMUSG00000073676 ortholog_one2one 11 retrogenes
retro_mmus_1005, retro_mmus_1719, retro_mmus_1750, retro_mmus_1934, retro_mmus_2483, retro_mmus_2485, retro_mmus_301, retro_mmus_3077, retro_mmus_386, retro_mmus_872, retro_mmus_877,
Oryctolagus cuniculus ENSOCUG00000010360 possible_ortholog 1 retrogene
retro_ocun_127,
Otolemur garnettii ENSOGAG00000034434 possible_ortholog 24 retrogenes
retro_ogar_1018, retro_ogar_1441, retro_ogar_1512, retro_ogar_1690, retro_ogar_1744, retro_ogar_1899, retro_ogar_191, retro_ogar_1921, retro_ogar_200, retro_ogar_2030, retro_ogar_2129, retro_ogar_2310, retro_ogar_235, retro_ogar_2439, retro_ogar_2636, retro_ogar_2928, retro_ogar_3088, retro_ogar_3350, retro_ogar_3419, retro_ogar_389, retro_ogar_777, retro_ogar_824, retro_ogar_829, retro_ogar_834,
Pongo abelii ENSPPYG00000025876 possible_ortholog 1 retrogene
retro_pabe_179,
Rattus norvegicus ENSRNOG00000014868 possible_ortholog 6 retrogenes
retro_rnor_1094, retro_rnor_1320, retro_rnor_1334, retro_rnor_2245, retro_rnor_2296, retro_rnor_984,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_86 99.03 100.00
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2. retro_chof_91 73.40 92.16
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3. retro_chof_143 82.76 56.86
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4. retro_chof_226 72.73 84.31
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5. retro_chof_303 70.59 66.67
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6. retro_chof_414 98.41 60.78
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7. retro_chof_420 72.41 85.29
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8. retro_chof_907 94.17 100.00
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9. retro_chof_940 91.18 100.00
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10. retro_chof_1048 98.04 100.00
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11. retro_chof_1160 83.54 77.45
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12. retro_chof_1476 76.67 85.29
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13. retro_chof_1561 65.00 58.82
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14. retro_chof_1755 66.15 61.76
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15. retro_chof_1880 70.13 75.49
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16. retro_chof_2052 94.81 74.51
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17. retro_chof_2053 88.54 94.12
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Download FASTA sequences of all ENSCHOG00000007417 retrocopies