Parental gene:

HSPE1, ENSEEUG00000005040

Aliases:None
Description:heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2559:2208..9792(+)


>ENSEEUG00000005040
ATAAGACAGGCTTTGGGGAAGTTTTTTCCTCTCTTTGACCAAGTGCTAGCTGAATGGAGTGCAGGTGAAACTGTAACCGA
AGAAGGCATTATGCTTCCAGAAAAATGTCAAAGAGTATTGCTAACAGCAGTAGCAGCNNNNNNNNNNNNNNNNNNNNNNN
NNACTGGAGAGATTCAACCAGTTAGTGTGAAAGTTGGAGATAAAGTTCTTCTGCCAGAATATGGAGGCACCAAAGTGGTT
CTAGATGACAAGGATTATTTCTTATTTCGAGATGGCGATATTCTTGGAAAGTATGTAGACTGA

Library Parental gene expression (RPM)
SRP017611_liver 43 .09 RPM
SRP017611_kidney 58 .32 RPM
SRP017611_brain 13 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013769 possible_ortholog 18 retrogenes
retro_amel_1027, retro_amel_1083, retro_amel_1084, retro_amel_1100, retro_amel_133, retro_amel_1504, retro_amel_1513, retro_amel_1623, retro_amel_1699, retro_amel_1819, retro_amel_199, retro_amel_23, retro_amel_269, retro_amel_310, retro_amel_329, retro_amel_491, retro_amel_506, retro_amel_922,
Canis familiaris ENSCAFG00000010890 possible_ortholog 4 retrogenes
retro_cfam_1768, retro_cfam_1883, retro_cfam_208, retro_cfam_556,
Callithrix jacchus ENSCJAG00000004008 possible_ortholog 1 retrogene
retro_cjac_254,
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2one 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Felis catus ENSFCAG00000014455 possible_ortholog 9 retrogenes
retro_fcat_114, retro_fcat_1174, retro_fcat_1406, retro_fcat_1686, retro_fcat_1723, retro_fcat_457, retro_fcat_681, retro_fcat_794, retro_fcat_97,
Gorilla gorilla ENSGGOG00000027944 possible_ortholog 17 retrogenes
retro_ggor_1051, retro_ggor_117, retro_ggor_1243, retro_ggor_1545, retro_ggor_157, retro_ggor_1676, retro_ggor_1821, retro_ggor_1956, retro_ggor_1957, retro_ggor_1958, retro_ggor_2331, retro_ggor_2391, retro_ggor_2476, retro_ggor_2492, retro_ggor_775, retro_ggor_841, retro_ggor_897,
Loxodonta africana ENSLAFG00000000057 possible_ortholog 1 retrogene
retro_lafr_69,
Macaca mulatta ENSMMUG00000010491 possible_ortholog 1 retrogene
retro_mmul_344,
Oryctolagus cuniculus ENSOCUG00000010360 possible_ortholog 1 retrogene
retro_ocun_127,
Otolemur garnettii ENSOGAG00000034434 possible_ortholog 24 retrogenes
retro_ogar_1018, retro_ogar_1441, retro_ogar_1512, retro_ogar_1690, retro_ogar_1744, retro_ogar_1899, retro_ogar_191, retro_ogar_1921, retro_ogar_200, retro_ogar_2030, retro_ogar_2129, retro_ogar_2310, retro_ogar_235, retro_ogar_2439, retro_ogar_2636, retro_ogar_2928, retro_ogar_3088, retro_ogar_3350, retro_ogar_3419, retro_ogar_389, retro_ogar_777, retro_ogar_824, retro_ogar_829, retro_ogar_834,
Pongo abelii ENSPPYG00000025876 possible_ortholog 1 retrogene
retro_pabe_179,
Rattus norvegicus ENSRNOG00000014868 possible_ortholog 6 retrogenes
retro_rnor_1094, retro_rnor_1320, retro_rnor_1334, retro_rnor_2245, retro_rnor_2296, retro_rnor_984,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_132 77.97 59.00
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2. retro_eeur_278 60.20 96.00
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3. retro_eeur_474 60.32 63.00
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4. retro_eeur_611 68.04 96.00
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5. retro_eeur_657 60.00 99.00
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6. retro_eeur_698 71.00 98.00
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Download FASTA sequences of all ENSEEUG00000005040 retrocopies