Parental gene:

SNRPE, ENSSSCG00000023562

Aliases:SNRPE, Sm-E, SmE, snRNP-E
Description:small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161]
Organism:Pig (Sus scrofa)
Coordinates:9:70909004..70915566(+)


>ENSSSCG00000023562
ATGGCGTACCGTGGCCAGGGCCAGAAAGTGCAGAAGGTGATGGTGCAGCCCATCAACCTCATCTTCAGATACTTGCAAAA
TAGATCACGGATTCAGGTGTGGCTTTATGAGCAAGTGAATATGCGGATAGAGGGCTGTATCATTGGTTTTGATGAGTATA
TGAACCTCGTATTAGATGATGCAGAAGAGATTCATTCTAAAACAAAGTCAAGAAAACAACTGGGTCGGATCATGCTAAAA
GGAGATAACATTACTCTGCTCCAAAGTGTCTCCAACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 11 .41 RPM
SRP014902_testis 46 .96 RPM
SRP018288_heart 33 .13 RPM
SRP018288_kidney 33 .39 RPM
SRP018288_liver 32 .14 RPM
SRP018288_lung 11 .71 RPM
SRP018856_adipose 18 .56 RPM
SRP035408_brain 30 .33 RPM
SRP035408_liver 36 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006735 possible_ortholog 1 retrogene
retro_cjac_3163,
Dasypus novemcinctus ENSDNOG00000004490 possible_ortholog 24 retrogenes
retro_dnov_1009, retro_dnov_1141, retro_dnov_122, retro_dnov_1223, retro_dnov_1312, retro_dnov_1314, retro_dnov_1362, retro_dnov_1438, retro_dnov_163, retro_dnov_191, retro_dnov_2398, retro_dnov_2671, retro_dnov_360, retro_dnov_414, retro_dnov_513, retro_dnov_579, retro_dnov_796, retro_dnov_828, retro_dnov_898, retro_dnov_900, retro_dnov_902, retro_dnov_93, retro_dnov_967, retro_dnov_983,
Echinops telfairi ENSETEG00000014015 ortholog_one2one 24 retrogenes
retro_etel_1136, retro_etel_1244, retro_etel_138, retro_etel_1443, retro_etel_1530, retro_etel_1636, retro_etel_1739, retro_etel_1781, retro_etel_1947, retro_etel_2143, retro_etel_234, retro_etel_258, retro_etel_310, retro_etel_377, retro_etel_466, retro_etel_546, retro_etel_56, retro_etel_579, retro_etel_581, retro_etel_582, retro_etel_76, retro_etel_776, retro_etel_799, retro_etel_80,
Gorilla gorilla ENSGGOG00000000755 possible_ortholog 7 retrogenes
retro_ggor_1462, retro_ggor_1626, retro_ggor_1700, retro_ggor_2221, retro_ggor_228, retro_ggor_2892, retro_ggor_91,
Myotis lucifugus ENSMLUG00000013244 possible_ortholog 8 retrogenes
retro_mluc_1639, retro_mluc_1650, retro_mluc_1994, retro_mluc_2045, retro_mluc_2088, retro_mluc_2326, retro_mluc_85, retro_mluc_919,
Mustela putorius furo ENSMPUG00000011642 possible_ortholog 7 retrogenes
retro_mputfur_1078, retro_mputfur_1527, retro_mputfur_1634, retro_mputfur_53, retro_mputfur_638, retro_mputfur_729, retro_mputfur_949,
Pongo abelii ENSPPYG00000000326 possible_ortholog 8 retrogenes
retro_pabe_1375, retro_pabe_20, retro_pabe_2023, retro_pabe_228, retro_pabe_3015, retro_pabe_3620, retro_pabe_56, retro_pabe_610,
Sorex araneus ENSSARG00000003311 possible_ortholog 9 retrogenes
retro_sara_171, retro_sara_173, retro_sara_183, retro_sara_214, retro_sara_219, retro_sara_37, retro_sara_664, retro_sara_697, retro_sara_750,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_172 68.18 93.48
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2. retro_sscr_606 79.41 72.83
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3. retro_sscr_1159 82.35 55.43
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Download FASTA sequences of all ENSSSCG00000023562 retrocopies