RetrogeneDB ID: | retro_sscr_172 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:123561481..123561737(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSSSCG00000023562 | ||
Aliases: | SNRPE, Sm-E, SmE, snRNP-E | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 68.18 % |
Parental protein coverage: | 93.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWL-YEQVNMRIEGCIIGFDEYMNLVLD-DAEEIHSKT |
M.Y.GQGQ.VQK.MVQPIN.IFRYLQNRSRIQVWL..E.VNM.IEGCI.GFDEY.N..LD...EEIHSK. | |
Retrocopy | MVYHGQGQRVQKAMVQPINFIFRYLQNRSRIQVWL<FEKVNMCIEGCITGFDEYVNFALD<YVEEIHSKI |
Parental | KSRKQLGRIMLKGDNITL |
KSRK.LG.....G..... | |
Retrocopy | KSRK*LGQKKKTGSDYAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 11 .41 RPM |
SRP014902_testis | 0 .00 RPM | 46 .96 RPM |
SRP018288_heart | 0 .00 RPM | 33 .13 RPM |
SRP018288_kidney | 0 .00 RPM | 33 .39 RPM |
SRP018288_liver | 0 .00 RPM | 32 .14 RPM |
SRP018288_lung | 0 .00 RPM | 11 .71 RPM |
SRP018856_adipose | 0 .00 RPM | 18 .56 RPM |
SRP035408_brain | 0 .00 RPM | 30 .33 RPM |
SRP035408_liver | 0 .00 RPM | 36 .61 RPM |