RetrogeneDB ID: | retro_ggor_97 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:95843140..95843935(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027005 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSGGOG00000003182 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGKNKRLTKGGKKGA.KKVVDPFSKKDWYDVKA.AMF.IRNIGKTLVTRTQGTKIASDGLKG.VFEVS | |
Retrocopy | MAVGKNKRLTKGGKKGARKKVVDPFSKKDWYDVKATAMFSIRNIGKTLVTRTQGTKIASDGLKGHVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQNDEVAFRKF.LITEDVQGKNCL.NFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV | |
Retrocopy | LADLQNDEVAFRKFRLITEDVQGKNCLANFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
GFTKKRNNQIRKTSYAQHQQVRQI.KKM..IMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV | |
Retrocopy | GFTKKRNNQIRKTSYAQHQQVRQIQKKMIKIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
Parental | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD.TGAKVE.ADGYEPPVQESV | |
Retrocopy | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDKTGAKVEQADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 37 .36 RPM |
SRP007412_cerebellum | 0 .04 RPM | 41 .96 RPM |
SRP007412_heart | 0 .03 RPM | 19 .39 RPM |
SRP007412_kidney | 0 .37 RPM | 135 .79 RPM |
SRP007412_liver | 0 .11 RPM | 109 .31 RPM |
SRP007412_testis | 0 .21 RPM | 65 .37 RPM |