RetrogeneDB ID: | retro_amel_583 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192511.1:858184..858803(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSAMEG00000017334 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 84.58 % |
Parental protein coverage: | 91.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | VRKSSTPEEVKKRKKAVLFCLSEDKKNII-LEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDAT |
VRKSSTPEEVKK.KKAVL.CLSEDKKN.I.L.EGK.ILV.D.GQTVD.P.ATFVKMLPDKDC...LYD.T | |
Retrocopy | VRKSSTPEEVKKCKKAVLLCLSEDKKNSI>LKEGKNILVDDMGQTVDHPCATFVKMLPDKDC-FVLYDVT |
Parental | YETKESKKEDLVFIFWAPESAPLK-SKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSA |
YETKESKKE..V.IFWAPESA.LK.SKMIYASSKD.I.KKLT.IKHELQANCYEEVKD.CTLAEKLGGSA | |
Retrocopy | YETKESKKENVVIIFWAPESAFLK<SKMIYASSKDTIMKKLTEIKHELQANCYEEVKDHCTLAEKLGGSA |
Parental | VISLEGKPL-EPSPAPCLEHLAAPD-PAHGGCRL-PPSCQTGGAG-GIPAGGGQSLHPSCQTA-SPPGPS |
.ISLEGKPL.EPSPAPCLEHLAAPD.PAHGGCRL.PPSCQTGGAG.GIPAGGG.SLHP.CQTA.SPP.P. | |
Retrocopy | IISLEGKPL>EPSPAPCLEHLAAPD<PAHGGCRL<PPSCQTGGAG<GIPAGGGGSLHPTCQTAPSPPAPP |
Parental | SSLH |
SSLH | |
Retrocopy | SSLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |